CFEIntact is BCCfE’s version of HIVIntact – a python-based program for characterisation of genomic defects in NFL HIV-1 sequences, allowing putative intact genomes to be identified in-silico.
Welcome to CFEIntact’s documentation! On this page you will find:
- Try Online: Run CFEIntact directly in your browser — no installation required (WebAssembly).
- Quick Start: How to install and use this program.
- Workflow: Understand the step-by-step logic of CFEIntact.
- Inputs and Outputs: Learn about the supported input formats and the output generated by CFEIntact.
- Command Line Interface: Details on how to interact with CFEIntact.
- Tolerance limits: Lists values that CFEIntact uses when checking things like ORF’s lengths and their genetic distances.
- Project background: Development history of CFEIntact.