Welcome to BCCFE’s Proviral Pipeline documentation!
Here you can find:
- Quick start: How to install and use this program.
- Workflow: A high–level overview of the steps performed by the Proviral Pipeline.
- Proviral defects: The how’s and why’s of defect analysis in the Proviral Pipeline.
- Primers: All about PCR primers and their handling by the Proviral Pipeline.
- Error codes: Information about various error codes found in the outputs of the Proviral Pipeline.
- Steps: Low–level version of the Workflow page.
- Filtering workflow: Detailed description of the filtering process implemented in the Proviral Pipeline.
- Contributing: Helpful information for those who would like to modify and improve the Proviral Pipeline.